Co-expression analysis

Gene ID TaAffx.53534.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g24974: - (HF=4e+0)
Module size 7 genes
NF 0.38
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.80.89TaAffx.53534.1.S1_atCA691448--4e+0At4g24974-O.I.H.G.S.X.
0.5979.80.92TaAffx.143995.11.A1_s_atAY645945floral homeotic protein-9e-7At5g60120TOE2O.I.H.G.S.X.
0.5072.40.91TaAffx.109340.1.S1_atCA676831Phosphate transporter 2-1-2e-1At5g63240glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.4666.80.92Ta.1160.2.S1_x_atCA635399--1e+0Atmg00490-O.I.H.G.S.X.
0.2735.60.91TaAffx.58197.1.S1_atCA621529--4e+0At3g46320histone H4O.I.H.G.S.X.
0.2735.60.92Ta.12420.3.S1_x_atCA619975--1e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.2735.60.93TaAffx.108107.3.S1_atCA714538--4e+0At1g51950IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.499.9GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
20.699.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
18.299.7GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
12.599.4GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
11.199.3GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
10.399.2GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.898.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.298.5GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
7.198.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.998.4GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage