Co-expression analysis

Gene ID	TaAffx.53324.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g09070: - (HF=9e+0)
Module size	10 genes
NF	0.55
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	73.7	0.96	TaAffx.53324.1.S1_x_at	CA693604	-	-	9e+0	At4g09070	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.7649.3.A1_a_at	BQ161111	-	-	6e-3	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.97	Ta.7649.1.S1_x_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.97	Ta.7649.1.S1_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.7649.3.A1_at	BQ161111	-	-	6e-3	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.7649.2.S1_x_at	BJ321934	-	-	8e-5	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.96	Ta.494.1.S1_at	CK155824	-	-	5e-30	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.25402.1.S1_at	CK160504	-	-	4e-42	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.1517.1.S1_at	CA629173	porphobilinogen deaminase	-	1e-5	At5g08280	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.4937.1.A1_at	BQ166316	-	-	3e-1	At1g06515	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
13.5	99.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
12.2	99.4	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.7	99.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.0	99.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.7	99.1	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.9	99.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.0	98.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.5	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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