Co-expression analysis

Gene ID TaAffx.5323.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g32600: zinc finger (C3HC4-type RING finger) family protein (HF=4e-6)
Module size 6 genes
NF 0.35
%ile 56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.97TaAffx.5323.1.S1_atBJ319065--4e-6At4g32600zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3854.70.97Ta.1323.1.S1_atCK201629--5e-4At5g10330HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)O.I.H.G.S.X.
0.3651.90.97TaAffx.128927.1.A1_atCK207679--3e-2At4g03020transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3346.90.97Ta.2593.2.S1_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.3040.90.97Ta.8098.2.S1_atCA656870--6e+0At3g14200DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1821.00.97Ta.523.1.S1_atBE604675--2e-5At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.399.0GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.197.5GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.495.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM250908Tc_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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