Co-expression analysis

Gene ID	TaAffx.5323.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g32600: zinc finger (C3HC4-type RING finger) family protein (HF=4e-6)
Module size	6 genes
NF	0.35
%ile	56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.97	TaAffx.5323.1.S1_at	BJ319065	-	-	4e-6	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.1323.1.S1_at	CK201629	-	-	5e-4	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	TaAffx.128927.1.A1_at	CK207679	-	-	3e-2	At4g03020	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.2593.2.S1_at	BQ169061	-	-	1e-25	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.8098.2.S1_at	CA656870	-	-	6e+0	At3g14200	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.523.1.S1_at	BE604675	-	-	2e-5	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	99.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.1	97.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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