Co-expression analysis

Gene ID TaAffx.53146.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g17890: unknown protein (HF=3e-1)
Module size 11 genes
NF 0.23
%ile 39.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6483.60.89TaAffx.53146.1.S1_atCA696077--3e-1At3g17890unknown proteinO.I.H.G.S.X.
0.4362.20.92TaAffx.6313.1.S1_atCA688260--1e+1At2g22800HAT9O.I.H.G.S.X.
0.3854.70.92TaAffx.107429.1.S1_atCA699900--9e-1At5g19490DNA binding / sequence-specific DNA bindingO.I.H.G.S.X.
0.2735.60.91TaAffx.122210.3.S1_atCA689966--1e+1At5g54970unknown proteinO.I.H.G.S.X.
0.2227.10.91TaAffx.48792.1.S1_atCA657622--4e+0At5g16550unknown proteinO.I.H.G.S.X.
0.2024.00.91Ta.16475.1.S1_atCA606935--4e+0At2g29840protein binding / zinc ion bindingO.I.H.G.S.X.
0.1922.40.91TaAffx.110250.4.S1_atCA681765--1e+0At5g22140pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.1922.40.92TaAffx.108174.3.S1_atCA693477--8e-1At4g27740-O.I.H.G.S.X.
0.1517.10.92TaAffx.96386.1.S1_atAJ614346--8e+0At1g05760RTM1 (restricted tev movement 1)O.I.H.G.S.X.
0.1314.60.91Ta.13956.1.S1_atBJ287532--9e-1At3g27416unknown proteinO.I.H.G.S.X.
0.0910.40.92TaAffx.55895.1.S1_x_atCA659769--7e-2At2g38290ATAMT2 (AMMONIUM TRANSPORTER 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.099.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.898.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.098.8GSM143504Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
7.298.5GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
6.698.3GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.498.2GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.498.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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