Co-expression analysis

Gene ID TaAffx.52333.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g43600: NLI interacting factor (NIF) family protein (HF=1e+0)
Module size 31 genes
NF 0.25
%ile 41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.50.93TaAffx.52333.1.S1_atCA709186--1e+0At1g43600NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.5173.00.95TaAffx.90193.1.S1_atBQ606882--6e-2At4g36050endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.3244.40.95Ta.7410.3.S1_s_atBJ276966--7e-2At1g35510unknown proteinO.I.H.G.S.X.
0.3142.70.97Ta.8158.1.A1_atBQ161496--4e-1At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.3142.70.96TaAffx.5323.1.S1_atBJ319065--4e-6At4g32600zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3040.90.95Ta.1685.1.A1_s_atCD452721--4e+0At1g13330-O.I.H.G.S.X.
0.3040.90.96TaAffx.41681.1.S1_atCK214846--7e-3At1g29220transcriptional regulator family proteinO.I.H.G.S.X.
0.3040.90.96Ta.2593.2.S1_x_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.2939.20.97Ta.8098.2.S1_atCA656870--6e+0At3g14200DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2839.20.95TaAffx.128803.1.S1_atCD863540--2e+0At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.2839.20.97Ta.4881.2.A1_a_atBJ215436--1e+0At5g06450nucleic acid bindingO.I.H.G.S.X.
0.2735.60.96Ta.6385.1.S1_atCA719784--7e-16At4g33200XI-IO.I.H.G.S.X.
0.2735.60.97Ta.3321.1.A1_atBJ217547--4e-10At3g24200FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygenO.I.H.G.S.X.
0.2735.60.97Ta.2593.2.S1_atBQ169061--1e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.2430.30.97Ta.9887.3.A1_x_atBJ239587--3e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.2430.30.97Ta.523.1.S1_atBE604675--2e-5At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.2227.10.96Ta.25617.1.S1_atCD490922--4e-5At3g11220Paxneb protein-relatedO.I.H.G.S.X.
0.2125.50.95Ta.1855.1.A1_atBE446122--5e+0At5g39600unknown proteinO.I.H.G.S.X.
0.2125.50.96TaAffx.20511.1.S1_atCA725585--7e-11At1g03000PEX6 (PEROXIN 6)O.I.H.G.S.X.
0.2125.50.97Ta.7410.2.S1_atCA600530--3e-1At1g04970lipid-binding serum glycoprotein family proteinO.I.H.G.S.X.
0.2125.50.96TaAffx.118218.1.S1_atCA680536--1e+0At5g49310IMPA-5 (IMPORTIN ALPHA ISOFORM 5)O.I.H.G.S.X.
0.2125.50.95Ta.1307.3.S1_atCA613138--5e-11At2g27100SE (SERRATE)O.I.H.G.S.X.
0.2125.50.95Ta.2818.1.S1_x_atBJ319737--6e-1At1g53260unknown proteinO.I.H.G.S.X.
0.2024.00.97Ta.8971.1.S1_atCA727887--2e-10At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)O.I.H.G.S.X.
0.2024.00.95TaAffx.113301.1.S1_atCA616332--2e-2At4g20290unknown proteinO.I.H.G.S.X.
0.1922.40.96Ta.5005.1.S1_x_atBJ275308--9e-1At2g33610ATSWI3B (SWITCH SUBUNIT 3)O.I.H.G.S.X.
0.1719.80.96Ta.25396.1.S1_atCD452751--5e+0At1g29040unknown proteinO.I.H.G.S.X.
0.1719.80.97Ta.10112.1.S1_atCD884721--4e-12At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.1618.20.97Ta.9068.1.S1_atBJ320264--8e-8At4g12610transcription initiation factor IIF alpha subunit (TFIIF-alpha) family proteinO.I.H.G.S.X.
0.1415.80.95Ta.27085.1.S1_atCA643676--3e-9At5g25480DNMT2 (DNA METHYLTRANSFERASE-2)O.I.H.G.S.X.
0.089.40.96Ta.2643.2.S1_x_atCA683105--1e-3At1g71790F-actin capping protein beta subunit family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.098.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
3.996.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.793.3GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.492.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.492.0GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.291.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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