Co-expression analysis

Gene ID TaAffx.52087.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g04770: RPSAb (40S ribosomal protein SA B) (HF=6e-2)
Module size 21 genes
NF 0.32
%ile 51.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9899.90.76TaAffx.52087.1.S1_atCA713424--6e-2At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.4362.20.89TaAffx.9418.1.S1_atCA599433--4e+0At5g55680glycine-rich proteinO.I.H.G.S.X.
0.4058.40.89TaAffx.65420.1.S1_atBJ247128--4e+0At2g23540GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.4058.40.90TaAffx.58303.1.S1_atCA620762--4e+0At3g61050NTMC2T4O.I.H.G.S.X.
0.3753.00.93Ta.17659.1.S1_x_atCA605465--1e-9At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.3549.80.94TaAffx.113024.3.S1_atCA618057--3e-1At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.3448.10.93TaAffx.27409.1.S1_atCA677175--4e+0At1g02405proline-rich family proteinO.I.H.G.S.X.
0.3448.10.92TaAffx.108544.2.S1_x_atCA687168--3e+0At5g14730unknown proteinO.I.H.G.S.X.
0.3142.70.93TaAffx.112068.1.S1_atCA627320--4e-9At3g16240DELTA-TIPO.I.H.G.S.X.
0.3142.70.94TaAffx.30435.1.S1_atCA625345--9e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.3142.70.96Ta.6759.2.S1_atBJ211299--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.3040.90.95Ta.6759.2.S1_x_atBJ211299--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.3040.90.95Ta.21581.1.S1_atCA696527--4e+0At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.2839.20.95TaAffx.85941.1.S1_atCA618291--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2735.60.95Ta.16201.1.S1_atCA602442--3e+0At5g57535unknown proteinO.I.H.G.S.X.
0.2735.60.96Ta.6762.3.S1_atBJ246546--1e+0At5g61490-O.I.H.G.S.X.
0.2430.30.94TaAffx.82721.1.S1_atCA668034--3e+1At4g20780calcium-binding protein, putativeO.I.H.G.S.X.
0.2227.10.94TaAffx.110759.1.S1_atCA654729--1e+0At4g35820oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2125.50.92Ta.17822.1.S1_atCA624617--4e+0At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)O.I.H.G.S.X.
0.1719.80.89TaAffx.8692.1.S1_atCA621592--7e-5At1g13950ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)O.I.H.G.S.X.
0.1517.10.93TaAffx.24833.1.S1_atCA711224--7e-1At1g68945unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.699.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.498.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.198.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.398.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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