Co-expression analysis

Gene ID TaAffx.52035.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g61412: unknown protein (HF=1e-2)
Module size 6 genes
NF 0.01
%ile 3.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.80TaAffx.52035.1.S1_atCA714343--1e-2At5g61412unknown proteinO.I.H.G.S.X.
0.045.80.89TaAffx.37081.1.S1_atBJ301931--4e+0At2g31560unknown proteinO.I.H.G.S.X.
0.034.70.91TaAffx.28239.1.S1_atCA663013--2e+0At1g11785unknown proteinO.I.H.G.S.X.
0.034.70.90TaAffx.23355.1.S1_atCA736144--1e+1At4g33220enzyme inhibitor/ pectinesteraseO.I.H.G.S.X.
0.023.60.92TaAffx.35248.1.S1_atCA731653--1e+0At3g20620F-box family protein-relatedO.I.H.G.S.X.
-0.70.88TaAffx.107803.1.S1_atCA695052--3e-2At5g27440unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.297.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM246384SB165_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stemLink to GEO
4.596.9GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.296.6GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM143501Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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