Co-expression analysis

Gene ID TaAffx.51594.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g51810: EM1 (LATE EMBRYOGENESIS ABUNDANT 1) (HF=1e+0)
Module size 6 genes
NF 0.65
%ile 89.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.96TaAffx.51594.1.S1_atCA723204--1e+0At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.6786.30.96Ta.18019.2.S1_atCA625748--1e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.6182.00.96TaAffx.85941.1.S1_atCA618291--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.6182.00.96Ta.6759.2.S1_atBJ211299--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.6081.00.96Ta.6759.2.S1_x_atBJ211299--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.4260.90.96TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.999.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
12.499.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
11.799.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
11.799.3GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.599.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.898.7GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.898.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.398.2GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.997.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9415.2.A1_at, orthologous to the query gene, TaAffx.51594.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.5Zm.9415.2.A1_atAt3g51810--7e-2At5g01075beta-galactosidaseO.I.H.G.S.X.
0.7389.9Zm.6398.1.A1_atAt3g51810transposon protein Mutator sub-class-3e+0At2g43660glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.6381.1Zm.157.1.S1_atAt3g51810catalase2-3e-22At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.5976.1ZmAffx.1315.1.S1_atAt3g51810--2e+0At5g41080glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.5571.6Zm.5008.1.A1_atAt3g51810hypothetical protein LOC100275589-2e-29At5g54870unknown proteinO.I.H.G.S.X.
0.5369.1Zm.6927.2.A1_a_atAt3g51810hypothetical protein LOC100194137-1e-20At5g05080UBC22 (ubiquitin-conjugating enzyme 22)O.I.H.G.S.X.
0.5267.3ZmAffx.744.1.S1_atAt3g51810--1e-1At1g48300unknown proteinO.I.H.G.S.X.
0.5166.4Zm.2163.1.S1_atAt3g51810--2e-4At3g59400GUN4O.I.H.G.S.X.
0.5065.7Zm.3623.1.S1_atAt3g51810hypothetical protein LOC100216808-7e+0At5g52440HCF106O.I.H.G.S.X.
0.4961.9Zm.16861.2.S1_atAt3g51810L-ascorbate oxidase-7e-4At1g55570sks12 (SKU5 Similar 12)O.I.H.G.S.X.
0.4352.8Zm.4477.1.A1_atAt3g51810hypothetical protein LOC100277895-3e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.4251.3Zm.3975.1.S1_atAt3g518105a2 protein-2e+1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.4149.7Zm.14807.1.S1_atAt3g51810Hypothetical protein LOC100192365-3e+0At5g15560unknown proteinO.I.H.G.S.X.
0.4149.7Zm.16988.1.A1_atAt3g51810beta-7 tubulin-4e-117At5g23860TUB8O.I.H.G.S.X.
0.3945.6Zm.2758.1.A1_atAt3g51810--2e-6At2g25730unknown proteinO.I.H.G.S.X.
0.3538.9Zm.19234.1.A1_atAt3g51810hypothetical protein LOC100191668-3e-1At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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