CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.51452.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At5g56369: - (HF=1e+1)

Module size 6 genes

NF 0.69

%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 0.96 TaAffx.51452.1.S1_x_at CA724758 - - 1e+1 At5g56369 - O.I. H.G. S.X.
0.73 89.1 0.95 Ta.25522.2.S1_x_at CA683586 - - 2e-1 At4g13560 UNE15 (unfertilized embryo sac 15) O.I. H.G. S.X.
0.71 88.0 0.93 TaAffx.5086.1.S1_at CA723258 - - 5e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.60 81.0 0.95 TaAffx.51452.1.S1_at CA724758 - - 1e+1 At5g56369 - O.I. H.G. S.X.
0.53 74.9 0.95 TaAffx.113756.1.S1_at CA605644 - - 1e-3 At5g04250 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.50 72.4 0.95 TaAffx.80668.1.S1_at CA694164 - - 1e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.3 99.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.9 99.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.2 99.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7 99.1 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.3 98.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.8 98.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7 98.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.2 98.1 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0 98.0 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM298066 Leaf tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.114096.2.A1_a_at, orthologous to the query gene, TaAffx.51452.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 91.7 PtpAffx.114096.2.A1_a_at At5g56369 - - 6e+0 At4g01995 unknown protein O.I. H.G. S.X.
0.42 68.6 Ptp.7694.1.S1_s_at At5g56369 hypothetical protein - 6e-1 At4g16490 binding O.I. H.G. S.X.
0.42 68.6 Ptp.4348.1.A1_at At5g56369 hypothetical protein - 5e+0 At4g19645 - O.I. H.G. S.X.
0.36 61.6 PtpAffx.200794.1.S1_at At5g56369 f-box family protein - 5e-10 At2g28510 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.36 61.6 Ptp.1242.1.S1_at At5g56369 - - 6e-6 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.13 21.6 PtpAffx.96911.1.S1_at At5g56369 hypothetical protein - 1e-4 At1g45976 SBP1 (s-ribonuclease binding protein 1) O.I. H.G. S.X.
0.11 18.1 PtpAffx.142009.1.S1_at At5g56369 - - 1e-1 At1g16240 SYP51 (SYNTAXIN OF PLANTS 51) O.I. H.G. S.X.
0.07 11.6 Ptp.7904.1.S1_at At5g56369 hypothetical protein - 8e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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