Co-expression analysis

Gene ID TaAffx.51452.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g56369: - (HF=1e+1)
Module size 6 genes
NF 0.69
%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.10.96TaAffx.51452.1.S1_x_atCA724758--1e+1At5g56369-O.I.H.G.S.X.
0.7389.10.95Ta.25522.2.S1_x_atCA683586--2e-1At4g13560UNE15 (unfertilized embryo sac 15)O.I.H.G.S.X.
0.7188.00.93TaAffx.5086.1.S1_atCA723258--5e-2At3g50550unknown proteinO.I.H.G.S.X.
0.6081.00.95TaAffx.51452.1.S1_atCA724758--1e+1At5g56369-O.I.H.G.S.X.
0.5374.90.95TaAffx.113756.1.S1_atCA605644--1e-3At5g04250OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.5072.40.95TaAffx.80668.1.S1_atCA694164--1e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.399.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
10.999.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
10.299.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.799.1GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.398.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.898.7GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.798.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM298066Leaf tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os11g0147800, orthologous to the query gene, TaAffx.51452.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8896.8Os11g0147800At5g56369-Wali7 protein (Fragment)4e-1At1g14620DECOY (DECOY)O.I.H.G.S.X.
0.8194.8Os04g0498600At5g56369-S- adenosylmethionine decarboxylase beta chain]2e-5At5g15948CPuORF10 (Conserved peptide upstream open reading frame 10)O.I.H.G.S.X.
0.6382.7Os05g0574500At5g56369-GTP-binding nuclear protein RAN1B (Fragment)1e-112At5g20020RAN2O.I.H.G.S.X.
0.5877.0Os02g0760300At5g56369-Immunophilin2e-8At5g64350FKBP12 (FK506-BINDING PROTEIN)O.I.H.G.S.X.
0.5777.0Os07g0694700At5g56369-Ascorbate peroxidase (EC 1.11.1.11)4e-25At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X.
0.5777.0Os06g0130900At5g56369-Histone H3.31e-3At4g40030histone H3.2O.I.H.G.S.X.
0.5676.3Os07g0545400At5g56369-Protein H2A4e-7At5g54640RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)O.I.H.G.S.X.
0.5573.7Os02g0121300At5g56369-Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein)9e-12At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.5269.6Os08g0366100At5g56369-EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment)6e-11At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.5068.0Os03g0390600At5g56369-Histone H3.35e-105At4g40040histone H3.2O.I.H.G.S.X.
0.4458.1Os11g0425600At5g56369-Four F5 protein family protein5e+0At5g42040RPN12b (Regulatory Particle Non-ATPase 12b)O.I.H.G.S.X.
0.4253.9Os06g0681400At5g56369-Polyubiquitin1e-160At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.4051.1Os08g0126300At5g56369-Glyceraldehyde-3-phosphate dehydrogenase(Fragment)6e-23At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.4051.1Os03g0670700At5g56369-Glycine-rich RNA-binding protein GRP1A2e-6At4g39260GR-RBP8O.I.H.G.S.X.
0.3948.3Os01g0813400At5g56369-ADP-ribosylation factor2e-96At2g47170ARF1A1CO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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