Co-expression analysis

Gene ID	TaAffx.51452.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g56369: - (HF=1e+1)
Module size	6 genes
NF	0.69
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.96	TaAffx.51452.1.S1_x_at	CA724758	-	-	1e+1	At5g56369	-	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.95	Ta.25522.2.S1_x_at	CA683586	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.93	TaAffx.5086.1.S1_at	CA723258	-	-	5e-2	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	TaAffx.51452.1.S1_at	CA724758	-	-	1e+1	At5g56369	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.9	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.2	99.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7	99.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.3	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig366_at, orthologous to the query gene, TaAffx.51452.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig366_at	At5g56369	-	-	2e+0	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	O.I.	H.G.	S.X.	Please select
0.71	87.1	X87690_s_at	At5g56369	m12 protein	-	1e-15	At4g26930	MYB97 (myb domain protein 97)	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig15922_at	At5g56369	-	-	6e-10	At2g01070	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	HS18K19u_s_at	At5g56369	m12 protein	-	3e+0	At1g80670	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig4786_at	At5g56369	-	-	4e-5	At5g50690	AtHSD7 (hydroxysteroid dehydrogenase 7)	O.I.	H.G.	S.X.	Please select
0.40	53.1	HT05D14u_s_at	At5g56369	-	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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