Co-expression analysis

Gene ID TaAffx.51452.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g56369: - (HF=1e+1)
Module size 6 genes
NF 0.69
%ile 92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.10.96TaAffx.51452.1.S1_x_atCA724758--1e+1At5g56369-O.I.H.G.S.X.
0.7389.10.95Ta.25522.2.S1_x_atCA683586--2e-1At4g13560UNE15 (unfertilized embryo sac 15)O.I.H.G.S.X.
0.7188.00.93TaAffx.5086.1.S1_atCA723258--5e-2At3g50550unknown proteinO.I.H.G.S.X.
0.6081.00.95TaAffx.51452.1.S1_atCA724758--1e+1At5g56369-O.I.H.G.S.X.
0.5374.90.95TaAffx.113756.1.S1_atCA605644--1e-3At5g04250OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.5072.40.95TaAffx.80668.1.S1_atCA694164--1e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.399.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
10.999.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
10.299.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.799.1GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.398.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.898.7GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.798.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM298066Leaf tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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