Co-expression analysis

Gene ID TaAffx.51450.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g20720: pentatricopeptide (PPR) repeat-containing protein (HF=4e-2)
Module size 7 genes
NF 0.46
%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.50.87TaAffx.51450.1.S1_atCA724780--4e-2At2g20720pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4464.50.95TaAffx.92350.1.S1_atBJ269587--1e+0At5g47306unknown proteinO.I.H.G.S.X.
0.4260.90.95TaAffx.119601.1.S1_atBJ266980--9e+0At5g59950RNA and export factor-binding protein, putativeO.I.H.G.S.X.
0.4058.40.95TaAffx.118866.1.S1_atCA742026--8e-2At5g57570-O.I.H.G.S.X.
0.3142.70.96TaAffx.80426.1.S1_atCA600418--4e-1At2g12935unknown proteinO.I.H.G.S.X.
0.3040.90.95TaAffx.85343.1.S1_atCA623566--4e+0At5g34828-O.I.H.G.S.X.
0.2735.60.95TaAffx.117156.3.S1_atCA709106--9e-1At5g48575unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.298.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM138207genotype B11 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.897.2GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.695.6GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM298088Crown tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM138147genotype G13 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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