Co-expression analysis

Gene ID TaAffx.51314.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g07680: ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) (HF=3e-1)
Module size 6 genes
NF 0.02
%ile 5.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.85TaAffx.51314.1.S1_x_atCA727605--3e-1At5g07680ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)O.I.H.G.S.X.
0.056.70.91TaAffx.112433.2.S1_atCA623960--3e-41At3g12780PGK1 (PHOSPHOGLYCERATE KINASE 1)O.I.H.G.S.X.
0.023.60.92Ta.28464.1.S1_atCF134137--4e+0At4g37080unknown proteinO.I.H.G.S.X.
0.023.60.93TaAffx.21371.2.S1_s_atCA741418--8e-11At5g45170CbbY protein-relatedO.I.H.G.S.X.
0.012.40.92Ta.16056.1.S1_atCA596439--2e-1At3g11400eukaryotic translation initiation factor 3G / eIF3gO.I.H.G.S.X.
0.012.40.92TaAffx.5799.1.S1_atCA698341--4e+0At5g53560CB5-E (CYTOCHROME B5 ISOFORM E)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
6.898.4GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
5.597.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM298066Leaf tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM138205genotype H8 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.194.5GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM138188genotype F38a developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM138144Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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