Co-expression analysis

Gene ID TaAffx.50913.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g09467: - (HF=2e+1)
Module size 10 genes
NF 0.40
%ile 64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.93TaAffx.50913.1.S1_atCA733503--2e+1At4g09467-O.I.H.G.S.X.
0.6483.60.94Ta.19361.2.S1_atCA650802--5e-15At4g12650-O.I.H.G.S.X.
0.5879.20.94TaAffx.110665.1.S1_atCA656430--4e+0At2g33250unknown proteinO.I.H.G.S.X.
0.5678.60.94Ta.2138.2.S1_atCA632124--1e+0At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.
0.4464.50.94TaAffx.78428.1.S1_atCA732797--1e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.3956.10.95TaAffx.65688.1.S1_x_atBJ232502--2e+1At3g02480ABA-responsive protein-relatedO.I.H.G.S.X.
0.3854.70.95TaAffx.83840.1.S1_atCA649783--4e+0At1g28170sulfotransferase family proteinO.I.H.G.S.X.
0.3142.70.95Ta.26652.1.A1_atCD491481--1e-3At1g36050unknown proteinO.I.H.G.S.X.
0.2839.20.94TaAffx.25411.1.S1_atCA700489--4e+0At4g35320unknown proteinO.I.H.G.S.X.
0.2024.00.94TaAffx.111311.1.S1_atCA643595--1e+0At1g61940AtTLP4 (TUBBY LIKE PROTEIN 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.798.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.096.3GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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