Co-expression analysis

Gene ID	TaAffx.5065.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g37540: LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39) (HF=4e+0)
Module size	6 genes
NF	0.05
%ile	14.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.75	TaAffx.5065.1.S1_at	CA723799	-	-	4e+0	At4g37540	LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.8883.2.S1_x_at	BQ162560	-	-	2e-6	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.8883.2.S1_at	BQ162560	-	-	2e-6	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	TaAffx.83853.1.S1_at	CA649565	-	-	4e+0	At3g25220	FKBP15-1	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.89	Ta.6789.2.S1_x_at	BJ225484	-	-	1e-18	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	Ta.5239.1.S1_at	BJ298392	-	-	1e-1	At1g58684	40S ribosomal protein S2, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.5	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.9	97.3	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM111184	genotype C22 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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