CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.49749.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g79620: leucine-rich repeat transmembrane protein kinase, putative (HF=1e-12)

Module size 6 genes

NF 0.04

%ile 11.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.80 TaAffx.49749.1.S1_at CA639769 - - 1e-12 At1g79620 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.07 8.6 0.92 Ta.19604.1.S1_at CA653992 - - 8e+0 At5g46795 MSP2 (microspore-specific promoter 2) O.I. H.G. S.X.
0.06 7.6 0.93 TaAffx.111776.1.S1_x_at CA633994 - - 9e-1 At5g16650 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.03 4.7 0.92 Ta.25139.1.S1_at CA615602 - - 7e+0 At5g17150 - O.I. H.G. S.X.
0.02 3.6 0.93 Ta.11730.1.S1_at CA736324 - - 1e+0 At1g75470 ATPUP15 O.I. H.G. S.X.
0.01 2.4 0.91 TaAffx.38420.1.S1_at BJ233527 - - 3e-1 At1g51960 IQD27 (IQ-domain 27) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.7 98.9 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM138207 genotype B11 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.3 96.7 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1 96.4 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.11950.1.A1_at, orthologous to the query gene, TaAffx.49749.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.3 Zm.11950.1.A1_at At1g79620 - - 2e-6 At3g19700 IKU2 (HAIKU2) O.I. H.G. S.X.
0.61 79.5 Zm.11951.1.A1_at At1g79620 - - 4e+0 At3g56090 ATFER3 (ferritin 3) O.I. H.G. S.X.
0.52 67.3 Zm.9927.1.S1_at At1g79620 DNA polymerase epsilon subunit 3 - 2e+0 At5g45090 AtPP2-A7 (Phloem protein 2-A7) O.I. H.G. S.X.
0.33 36.0 Zm.728.1.A1_at At1g79620 GR1a protein - 5e-1 At4g12550 AIR1 O.I. H.G. S.X.
0.33 36.0 Zm.16367.2.S1_at At1g79620 - - 9e+0 At4g05494 unknown protein O.I. H.G. S.X.
0.33 36.0 Zm.6743.3.S1_at At1g79620 hypothetical protein LOC100216801 - 2e-10 At3g02420 unknown protein O.I. H.G. S.X.
0.28 28.1 Zm.2368.1.A1_at At1g79620 - - 4e-21 At4g32390 phosphate translocator-related O.I. H.G. S.X.
0.25 21.3 Zm.356.1.S1_at At1g79620 hypothetical protein AY104017 /// ubiquitin conjugating enzyme - 2e-18 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) O.I. H.G. S.X.
0.25 21.3 Zm.875.1.A1_at At1g79620 - - 4e-4 At3g14860 NHL repeat-containing protein O.I. H.G. S.X.
0.22 16.9 Zm.8788.1.A1_at At1g79620 hypothetical protein LOC100276785 - 1e+0 At5g41570 WRKY24 O.I. H.G. S.X.
0.11 5.3 Zm.15895.1.A1_at At1g79620 hypothetical protein LOC100192599 - 3e+0 At3g26400 EIF4B1 O.I. H.G. S.X.
0.10 4.6 Zm.338.1.A1_at At1g79620 somatic embryogenesis receptor-like kinase1 - 4e-34 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) O.I. H.G. S.X.
0.08 3.4 Zm.16785.2.S1_at At1g79620 Ubiquitin-conjugating enzyme protein E2 - 6e-1 At5g46860 VAM3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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