Co-expression analysis

Gene ID TaAffx.4944.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g56230: PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) (HF=4e+0)
Module size 25 genes
NF 0.47
%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.93TaAffx.4944.1.S1_atCA728034--4e+0At5g56230PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)O.I.H.G.S.X.
0.5979.80.95TaAffx.115939.2.S1_atCA677586--7e-2At1g30800-O.I.H.G.S.X.
0.5879.20.94Ta.22060.1.A1_atBG906078--2e-1At2g20690lumazine-binding family proteinO.I.H.G.S.X.
0.5678.60.95TaAffx.90026.1.S1_atBQ609544--3e-1At3g20830protein kinase family proteinO.I.H.G.S.X.
0.5576.80.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.5576.80.94TaAffx.111909.1.S1_atCA630666--2e+1At5g09250KIWIO.I.H.G.S.X.
0.4969.70.94TaAffx.110167.1.S1_atCA662870--4e+0At4g14440HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)O.I.H.G.S.X.
0.4969.70.93Ta.26301.1.A1_atCD490595--2e+0At1g75460ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.4869.00.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.4869.00.94TaAffx.29371.1.S1_atCA644147--4e+0At5g18310unknown proteinO.I.H.G.S.X.
0.4869.00.96TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4666.80.95TaAffx.114049.1.S1_atCA599641--5e+0At4g33560unknown proteinO.I.H.G.S.X.
0.4464.50.95TaAffx.85941.1.S1_atCA618291--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4464.50.95TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.4362.20.95TaAffx.5596.1.S1_atCA705635--3e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.4362.20.96TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.4260.90.95TaAffx.79437.1.S1_atCA715704--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.4058.40.94TaAffx.30598.1.S1_atCA623743--1e+0At3g05230signal peptidase subunit family proteinO.I.H.G.S.X.
0.4058.40.96TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.3956.10.95TaAffx.50210.1.S1_atCA744417--7e-2At1g60880AGL56O.I.H.G.S.X.
0.3956.10.94TaAffx.132656.2.S1_atCA600729--1e+0At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)O.I.H.G.S.X.
0.3854.70.94TaAffx.31212.1.S1_atCA618488--7e+0At5g20820auxin-responsive protein-relatedO.I.H.G.S.X.
0.3244.40.95Ta.30411.1.S1_atCK209297--5e+0At5g62280unknown proteinO.I.H.G.S.X.
0.2939.20.95TaAffx.78517.1.S1_atCA731451--4e+0At2g25720unknown proteinO.I.H.G.S.X.
0.2735.60.94TaAffx.31313.1.S1_atCA617546--1e+1At3g52561unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.598.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.795.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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