Co-expression analysis

Gene ID	TaAffx.4898.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g01530: MLP329 (MLP-LIKE PROTEIN 329) (HF=4e+0)
Module size	28 genes
NF	0.45
%ile	70.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.94	TaAffx.4898.1.S1_at	CA729097	-	-	4e+0	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	O.I.	H.G.	S.X.	Please select
0.76	90.1	0.94	Ta.26670.1.A1_at	CD491523	-	-	9e-20	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.94	TaAffx.83097.1.S1_at	CA662094	-	-	7e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.94	TaAffx.58227.1.S1_at	CA621342	-	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.94	TaAffx.65565.2.S1_at	BJ232957	-	-	3e-1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	TaAffx.105558.1.S1_x_at	CA732718	-	-	9e-1	At2g28570	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.95	Ta.18356.1.S1_at	CA635027	-	-	3e+0	At1g48000	MYB112 (myb domain protein 112)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	TaAffx.35493.1.S1_at	BQ606743	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.95	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	TaAffx.85651.1.S1_at	CA620840	-	-	1e+1	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.117156.3.S1_at	CA709106	-	-	9e-1	At5g48575	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.3501.3.A1_at	CA658638	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.58994.1.S1_at	CA610461	-	-	4e+0	At3g52510	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	TaAffx.79437.1.S1_at	CA715704	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	Ta.17601.1.S1_at	CA622316	-	-	4e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.28609.1.S1_x_at	CK217364	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.30013.1.S1_at	CK213051	-	-	1e-18	At5g14390	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7	97.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.5	97.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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