Co-expression analysis

Gene ID	TaAffx.4857.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g77682: - (HF=4e+0)
Module size	6 genes
NF	0.61
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	TaAffx.4857.1.S1_at	CA730111	-	-	4e+0	At1g77682	-	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.95	TaAffx.6157.1.S1_at	CA690748	-	-	4e+0	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.3	99.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
27.4	99.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.6	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1620043_at, orthologous to the query gene, TaAffx.4857.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	1620043_at	At1g77682	hypothetical protein LOC100248492	-	1e-3	At2g31880	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	1620283_s_at	At1g77682	hypothetical protein LOC100245165	-	1e+0	At5g41030	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.53	75.2	1618038_at	At1g77682	enhanced disease susceptibility 1	-	1e-10	At3g48090	EDS1 (enhanced disease susceptibility 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1618208_s_at	At1g77682	hypothetical protein LOC100261805	-	8e-3	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	1607805_s_at	At1g77682	hypothetical protein LOC100263428	-	2e-1	At4g31500	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1614085_s_at	At1g77682	hypothetical protein LOC100263755 /// hypothetical protein LOC100242248 /// hypothetical protein LOC100245376 /// hypothetical protein LOC100251011 /// hypothetical protein LOC100262350 /// hypothetical protein LOC100262818 /// hypothetical protein LOC100263363 /// hypothetical protein LOC100265356	-	1e+0	At1g78050	PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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