Co-expression analysis

Gene ID TaAffx.47673.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g35460: unknown protein (HF=3e-9)
Module size 6 genes
NF 0.58
%ile 84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.97TaAffx.47673.1.S1_atBQ806349--3e-9At5g35460unknown proteinO.I.H.G.S.X.
0.6081.00.92Ta.19456.1.A1_s_atCD865926--3e-1At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)O.I.H.G.S.X.
0.6081.00.94Ta.28185.2.S1_x_atCD869435--6e-1At3g46900COPT2O.I.H.G.S.X.
0.5072.40.92TaAffx.47673.2.S1_s_atCA661229--4e-3At5g35460unknown proteinO.I.H.G.S.X.
0.5072.40.96Ta.28185.1.S1_atAL820475--2e-4At3g46900COPT2O.I.H.G.S.X.
0.4058.40.94Ta.28185.1.S1_x_atAL820475--2e-4At3g46900COPT2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.099.1GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.298.5GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.698.3GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.598.3GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.797.9GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM138157genotype DH91 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8865.1.A1_at, orthologous to the query gene, TaAffx.47673.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5775.1Zm.8865.1.A1_atAt5g35460hypothetical protein LOC100191271-3e-9At5g35460unknown proteinO.I.H.G.S.X.
0.8395.6Zm.17628.1.S1_atAt5g35460--6e-17At2g34560katanin, putativeO.I.H.G.S.X.
0.7188.2Zm.17366.1.S1_s_atAt5g35460--1e+1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.6179.5Zm.15542.1.S1_atAt5g35460--2e-2At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.5674.4Zm.38.1.S1_atAt5g35460ser/thr protein phosphatase1-1e-12At2g29400TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)O.I.H.G.S.X.
0.3336.0Zm.6863.2.A1_atAt5g35460hypothetical protein LOC100193970-7e-67At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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