CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.47673.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g35460: unknown protein (HF=3e-9)

Module size 6 genes

NF 0.58

%ile 84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.97 TaAffx.47673.1.S1_at BQ806349 - - 3e-9 At5g35460 unknown protein O.I. H.G. S.X.
0.60 81.0 0.92 Ta.19456.1.A1_s_at CD865926 - - 3e-1 At2g20875 EPF1 (EPIDERMAL PATTERNING FACTOR 1) O.I. H.G. S.X.
0.60 81.0 0.94 Ta.28185.2.S1_x_at CD869435 - - 6e-1 At3g46900 COPT2 O.I. H.G. S.X.
0.50 72.4 0.92 TaAffx.47673.2.S1_s_at CA661229 - - 4e-3 At5g35460 unknown protein O.I. H.G. S.X.
0.50 72.4 0.96 Ta.28185.1.S1_at AL820475 - - 2e-4 At3g46900 COPT2 O.I. H.G. S.X.
0.40 58.4 0.94 Ta.28185.1.S1_x_at AL820475 - - 2e-4 At3g46900 COPT2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 99.1 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.7 98.7 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
7.2 98.5 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
6.9 98.4 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
6.6 98.3 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
6.5 98.3 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM138157 genotype DH91 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the grape gene, 1607598_at, orthologous to the query gene, TaAffx.47673.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1607598_at At5g35460 hypothetical protein LOC100262878 - 2e-40 At5g35460 unknown protein O.I. H.G. S.X.
0.60 81.9 1616376_at At5g35460 hypothetical protein LOC100243811 - 8e-1 At4g09110 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.43 61.5 1608406_at At5g35460 hypothetical protein LOC100266794 - 2e-52 At2g02180 TOM3 O.I. H.G. S.X.
0.36 50.7 1620212_at At5g35460 hypothetical protein LOC100254595 - 7e-1 At3g63120 CYCP1 O.I. H.G. S.X.
0.30 39.4 1616174_at At5g35460 - - 6e-2 At5g48350 nucleic acid binding O.I. H.G. S.X.
0.19 20.9 1613813_a_at At5g35460 - - 3e-11 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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