CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.47673.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g35460: unknown protein (HF=3e-9)

Module size 6 genes

NF 0.58

%ile 84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.97 TaAffx.47673.1.S1_at BQ806349 - - 3e-9 At5g35460 unknown protein O.I. H.G. S.X.
0.60 81.0 0.92 Ta.19456.1.A1_s_at CD865926 - - 3e-1 At2g20875 EPF1 (EPIDERMAL PATTERNING FACTOR 1) O.I. H.G. S.X.
0.60 81.0 0.94 Ta.28185.2.S1_x_at CD869435 - - 6e-1 At3g46900 COPT2 O.I. H.G. S.X.
0.50 72.4 0.92 TaAffx.47673.2.S1_s_at CA661229 - - 4e-3 At5g35460 unknown protein O.I. H.G. S.X.
0.50 72.4 0.96 Ta.28185.1.S1_at AL820475 - - 2e-4 At3g46900 COPT2 O.I. H.G. S.X.
0.40 58.4 0.94 Ta.28185.1.S1_x_at AL820475 - - 2e-4 At3g46900 COPT2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 99.1 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.7 98.7 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
7.2 98.5 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
6.9 98.4 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
6.6 98.3 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
6.5 98.3 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM138157 genotype DH91 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.21184.1.S1_at, orthologous to the query gene, TaAffx.47673.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 GmaAffx.21184.1.S1_at At5g35460 - - 2e-59 At5g35460 unknown protein O.I. H.G. S.X.
0.55 76.3 Gma.3813.1.S1_at At5g35460 - - 4e+0 At3g21350 RNA polymerase transcriptional regulation mediator-related O.I. H.G. S.X.
0.50 71.7 Gma.17662.2.S1_s_at At5g35460 - - 4e+0 At4g27590 copper-binding protein-related O.I. H.G. S.X.
0.36 50.8 Gma.10975.2.S1_s_at At5g35460 - - 5e-6 At3g21510 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) O.I. H.G. S.X.
0.29 39.0 Gma.593.1.S1_x_at At5g35460 MYB transcription factor MYB176 - 1e-11 At1g74840 myb family transcription factor O.I. H.G. S.X.
0.27 35.7 Gma.2831.1.S1_s_at At5g35460 - - 1e-8 At1g66140 ZFP4 (ZINC FINGER PROTEIN 4) O.I. H.G. S.X.
0.24 30.9 Gma.2677.1.S1_s_at At5g35460 - - 8e-7 At2g46370 JAR1 (JASMONATE RESISTANT 1) O.I. H.G. S.X.
0.23 29.9 Gma.46.1.S1_at At5g35460 bZIP transcription factor bZIP52 /// transcription factor bZIP76 - 4e-6 At5g10030 TGA4 (TGACG MOTIF-BINDING FACTOR 4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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