Co-expression analysis

Gene ID	TaAffx.46757.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g65158: - (HF=4e+0)
Module size	25 genes
NF	0.46
%ile	71.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.93	TaAffx.46757.1.A1_at	BJ319024	-	-	4e+0	At5g65158	-	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.95	Ta.4690.1.S1_at	CD907632	-	-	1e+0	At3g60290	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.95	Ta.26165.1.A1_at	CD452435	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.95	Ta.18077.1.S1_at	BF293924	-	-	5e+0	At5g62623	-	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.95	Ta.6996.1.S1_at	BJ317930	-	-	7e-1	At5g11600	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.11969.1.A1_a_at	CK208221	-	-	5e+0	At5g58500	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	Ta.4686.1.S1_at	CK151514	-	-	2e-1	At1g48980	oxidoreductase	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.26440.1.A1_at	CD490830	-	-	1e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.96	Ta.7477.1.S1_at	CK209166	-	-	2e+0	At1g38630	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	Ta.30930.1.S1_at	BJ312106	-	-	1e+0	At3g05830	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.11850.1.A1_at	BJ319744	-	-	1e+1	At3g09150	HY2 (ELONGATED HYPOCOTYL 2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.8921.1.A1_at	BQ162637	-	-	3e+0	At1g04230	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.27512.1.S1_at	BT009204.1	-	-	2e+0	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.7222.1.A1_at	BJ322973	-	-	3e-5	At2g45830	DTA2 (DOWNSTREAM TARGET OF AGL15 2)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	TaAffx.31476.1.S1_s_at	CA615264	-	-	1e+1	At5g64130	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	TaAffx.33907.1.S1_at	AJ609988	-	-	8e+0	At5g03270	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.10234.1.A1_at	CD910254	-	-	2e+0	At2g15710	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.8708.1.A1_at	BQ162257	-	-	3e+0	At2g14692	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	Ta.8173.1.S1_s_at	BQ161531	-	-	9e-5	At3g25140	QUA1 (QUASIMODO 1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.4701.1.S1_at	BJ270288	-	-	6e+0	At3g43270	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.23415.1.S1_at	BG907280	-	-	3e+0	At2g25735	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.1689.1.S1_at	BE443816	-	-	1e+0	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.9695.1.S1_at	BJ226687	-	-	9e-1	At3g58330	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.4891.1.A1_at	CK209693	-	-	7e+0	At3g59455	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.7	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.5	97.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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