Co-expression analysis

Gene ID	TaAffx.4661.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g45403: unknown protein (HF=7e-1)
Module size	6 genes
NF	0.31
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.64	TaAffx.4661.1.S1_at	CA735340	-	-	7e-1	At2g45403	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.28695.2.S1_s_at	CK210608	-	-	5e-16	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	TaAffx.60882.1.S1_at	BJ247902	-	-	4e+0	At1g63206	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.1058.3.S1_x_at	CN013117	S-adenosylmethionine decarboxylase precursor	-	8e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.24976.1.S1_x_at	CA659744	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit	-	1e-21	Atcg00490	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.1078.2.S1_a_at	BJ252383	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.8	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM298054	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.3	91.5	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM138190	genotype D39 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.2	91.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.1	90.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage