Co-expression analysis

Gene ID	TaAffx.43678.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g40100: LHCB4.3 (light harvesting complex PSII) (HF=9e+0)
Module size	10 genes
NF	0.54
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	73.7	0.91	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.92	TaAffx.98004.1.S1_at	BQ801268	-	-	1e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.92	Ta.30507.1.S1_at	CK214499	-	-	2e+0	At5g35230	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.92	Ta.4736.1.A1_at	BJ275856	-	-	6e+0	At1g54230	DNA binding	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	Ta.4674.1.S1_s_at	BJ269896	-	-	2e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	TaAffx.17013.2.S1_x_at	CA730181	-	-	1e+0	At4g10250	ATHSP22.0	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.91	Ta.13803.1.S1_x_at	CA498188	-	-	3e-2	At1g73630	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.91	Ta.24601.1.S1_at	BQ483742	-	-	1e+0	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.92	Ta.30507.2.S1_x_at	BJ321266	-	-	4e+0	At4g03600	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.6	98.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.0	98.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.3	98.2	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9	97.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage