Co-expression analysis

Gene ID TaAffx.4293.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g40010: AATP1 (AAA-ATPase 1) (HF=9e-1)
Module size 21 genes
NF 0.39
%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.10.86TaAffx.4293.2.S1_atCA744090--9e-1At5g40010AATP1 (AAA-ATPase 1)O.I.H.G.S.X.
0.6786.30.93TaAffx.80274.1.S1_atCA699135--2e+1At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.5576.80.93TaAffx.121565.1.S1_atCA650791--1e+0At4g09530auxin-responsive family proteinO.I.H.G.S.X.
0.5475.50.92TaAffx.85969.1.S1_atCA618026--7e-2At3g26780catalyticO.I.H.G.S.X.
0.5072.40.94TaAffx.81077.1.S1_s_atCA732020--5e-3At3g20900unknown proteinO.I.H.G.S.X.
0.4666.80.94TaAffx.122081.2.S1_atCA723648--3e+0At5g64800CLE21 (CLAVATA3/ESR-RELATED 21)O.I.H.G.S.X.
0.4565.20.93TaAffx.26416.1.S1_atCA689143--4e+1At5g01350unknown proteinO.I.H.G.S.X.
0.4464.50.91TaAffx.113081.1.S1_atCA618270--9e+0At4g05553zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.4260.90.92TaAffx.80206.1.S1_atCA699911--9e-1At5g41440zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3956.10.94Ta.13051.1.S1_atCA486369--9e-2At4g24026unknown proteinO.I.H.G.S.X.
0.3956.10.94TaAffx.111613.1.S1_atCA636910--9e-1At3g57670NTT (NO TRANSMITTING TRACT)O.I.H.G.S.X.
0.3753.00.93Ta.10327.2.S1_a_atCA723265--3e+0At2g04550IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)O.I.H.G.S.X.
0.3549.80.93Ta.8368.2.S1_atCA624505--2e-4At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)O.I.H.G.S.X.
0.3346.90.93TaAffx.52723.1.S1_atCA702893--2e+1At1g34840-O.I.H.G.S.X.
0.3346.90.93TaAffx.78163.1.S1_x_atCA736625--9e-3At4g08868unknown proteinO.I.H.G.S.X.
0.3142.70.94Ta.25608.2.S1_a_atCA739102--3e+0At1g77765unknown proteinO.I.H.G.S.X.
0.2839.20.94TaAffx.112810.1.S1_atCA620736--3e-1At5g57180CIA2 (CHLOROPLAST IMPORT APPARATUS 2)O.I.H.G.S.X.
0.2329.00.94Ta.8195.2.S1_atCD875760--2e-6At1g68010HPRO.I.H.G.S.X.
0.2329.00.93TaAffx.7591.1.S1_atCA656091--2e+1Atmg01020-O.I.H.G.S.X.
0.1922.40.94TaAffx.106663.1.S1_atCA714004--1e+0At5g23440FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)O.I.H.G.S.X.
0.1821.00.93TaAffx.107754.1.S1_atCD876350--1e+0At2g21780unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.0GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.898.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.598.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.297.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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