Co-expression analysis

Gene ID	TaAffx.40.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g22990: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=8e-5)
Module size	6 genes
NF	0.41
%ile	66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.93	TaAffx.40.1.S1_at	AJ615341	-	-	8e-5	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.28377.2.S1_s_at	CA699777	-	-	7e-4	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.9137.1.S1_at	BQ842448	-	-	9e-6	At3g13062	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.28377.2.S1_x_at	CA699777	-	-	7e-4	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	Ta.10739.1.A1_at	BQ166440	-	-	4e-1	At1g63600	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.13621.1.S1_at	BQ171971	-	-	2e-19	At2g36895	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.2	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
9.6	99.1	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
8.1	98.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage