Co-expression analysis

Gene ID TaAffx.3984.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g56840: DNA-binding family protein (HF=7e+0)
Module size 9 genes
NF 0.42
%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.98TaAffx.3984.1.S1_atCD938015--7e+0At5g56840DNA-binding family proteinO.I.H.G.S.X.
0.6786.30.98TaAffx.118990.1.A1_atBJ298906--1e+1At5g60880unknown proteinO.I.H.G.S.X.
0.5576.80.98Ta.9520.2.A1_atBJ229796--4e-4At5g27640TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)O.I.H.G.S.X.
0.5374.90.98Ta.6624.1.S1_a_atCK208299--4e-4At2g29530mitochondrial import inner membrane translocase (TIM10)O.I.H.G.S.X.
0.4666.80.98Ta.5254.1.S1_atBJ219348--2e-15At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.S.X.
0.4565.20.98Ta.2299.3.S1_a_atCA672009--4e+0At2g42220rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.4464.50.98Ta.2044.1.S1_atCN009661--4e-38At3g6024560S ribosomal protein L37a (RPL37aC)O.I.H.G.S.X.
0.4058.40.98Ta.12395.1.S1_atCK208181--2e-2At5g15610proteasome family proteinO.I.H.G.S.X.
0.1415.80.98Ta.2044.1.S1_x_atCN009661--4e-38At3g6024560S ribosomal protein L37a (RPL37aC)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.1GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.898.7GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.697.8GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298080Leaf tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
3.495.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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