CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.39457.1.A1_at

Gene name
Homology with Arabidopsis Similar to Atmg00850: - (HF=2e+0)

Module size 6 genes

NF 0.75

%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 0.95 TaAffx.39457.1.A1_at BG904975 - - 2e+0 Atmg00850 - O.I. H.G. S.X.
0.91 98.2 0.96 TaAffx.56013.1.S1_at CA658531 - - 6e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.83 93.4 0.95 TaAffx.108219.1.S1_at CA690622 - - 3e-1 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) O.I. H.G. S.X.
0.77 90.8 0.96 Ta.1977.2.A1_at BE231484 - - 1e+0 At3g07430 emb1990 (embryo defective 1990) O.I. H.G. S.X.
0.61 82.0 0.96 TaAffx.26385.1.S1_x_at CA689363 - - 4e+0 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.26385.1.S1_at CA689363 - - 4e+0 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.6 99.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.7 98.9 GSM298068 Leaf tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.8 98.4 GSM298089 Leaf tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4 97.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM298065 Leaf tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1613222_at, orthologous to the query gene, TaAffx.39457.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1613222_at Atmg00850 hypothetical protein LOC100241025 - 3e-1 At1g64220 TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2) O.I. H.G. S.X.
0.48 68.8 1607255_at Atmg00850 hypothetical protein LOC100243801 - 2e-39 At5g58590 RANBP1 (RAN BINDING PROTEIN 1) O.I. H.G. S.X.
0.30 39.4 1617378_at Atmg00850 hypothetical protein LOC100265457 - 7e-43 At5g13780 GCN5-related N-acetyltransferase, putative O.I. H.G. S.X.
0.30 39.4 1608103_at Atmg00850 hypothetical protein LOC100266523 - 3e-61 At2g47060 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.29 37.7 1608449_at Atmg00850 hypothetical protein LOC100247109 - 6e-72 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.29 37.7 1613194_at Atmg00850 hypothetical protein LOC100258632 - 4e-23 At5g42000 ORMDL family protein O.I. H.G. S.X.
0.29 37.7 1614946_at Atmg00850 hypothetical protein LOC100258219 - 8e-64 At4g24820 26S proteasome regulatory subunit, putative (RPN7) O.I. H.G. S.X.
0.27 34.0 1620593_at Atmg00850 hypothetical protein LOC100252659 - 1e-97 At1g30580 GTP binding O.I. H.G. S.X.
0.26 32.0 1614631_at Atmg00850 hypothetical protein LOC100254376 - 1e-137 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) O.I. H.G. S.X.
0.26 32.0 1618072_at Atmg00850 hypothetical protein LOC100249965 - 9e-1 At5g19151 unknown protein O.I. H.G. S.X.
0.23 27.5 1610875_at Atmg00850 similar to coatomer protein epsilon subunit family protein / COPE family protein - 2e-68 At1g30630 coatomer protein epsilon subunit family protein / COPE family protein O.I. H.G. S.X.
0.21 24.0 1609619_at Atmg00850 hypothetical protein LOC100242237 - 5e-103 At5g55190 RAN3 (RAN GTPASE 3) O.I. H.G. S.X.
0.21 24.0 1616871_at Atmg00850 hypothetical protein LOC100253007 /// similar to putative dihydrolipoamide succinyltransferase - 3e-26 At4g26910 2-oxoacid dehydrogenase family protein O.I. H.G. S.X.
0.20 22.4 1617538_at Atmg00850 hypothetical protein LOC100252692 - 1e+0 At5g17190 unknown protein O.I. H.G. S.X.
0.20 22.4 1616141_at Atmg00850 hypothetical protein LOC100258923 - 3e-48 At3g05000 transport protein particle (TRAPP) component Bet3 family protein O.I. H.G. S.X.
0.19 20.9 1622486_at Atmg00850 hypothetical protein LOC100247768 - 3e-13 At4g13520 SMAP1 (SMALL ACIDIC PROTEIN 1) O.I. H.G. S.X.
0.19 20.9 1608087_s_at Atmg00850 glyceraldehyde-3-phosphate dehydrogenase - 2e-103 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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