CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.39457.1.A1_at

Gene name
Homology with Arabidopsis Similar to Atmg00850: - (HF=2e+0)

Module size 6 genes

NF 0.75

%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 0.95 TaAffx.39457.1.A1_at BG904975 - - 2e+0 Atmg00850 - O.I. H.G. S.X.
0.91 98.2 0.96 TaAffx.56013.1.S1_at CA658531 - - 6e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.83 93.4 0.95 TaAffx.108219.1.S1_at CA690622 - - 3e-1 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) O.I. H.G. S.X.
0.77 90.8 0.96 Ta.1977.2.A1_at BE231484 - - 1e+0 At3g07430 emb1990 (embryo defective 1990) O.I. H.G. S.X.
0.61 82.0 0.96 TaAffx.26385.1.S1_x_at CA689363 - - 4e+0 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.26385.1.S1_at CA689363 - - 4e+0 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.6 99.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.7 98.9 GSM298068 Leaf tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.8 98.4 GSM298089 Leaf tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4 97.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM298065 Leaf tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6058.1.A1_at, orthologous to the query gene, TaAffx.39457.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.8 Gma.6058.1.A1_at Atmg00850 - - 3e+0 At3g04640 glycine-rich protein O.I. H.G. S.X.
0.57 78.8 Gma.6688.1.S1_at Atmg00850 - - 1e-1 At4g13310 CYP71A20 O.I. H.G. S.X.
0.50 71.7 Gma.2660.1.S1_at Atmg00850 - - 9e-13 At1g69060 heat shock protein binding O.I. H.G. S.X.
0.43 60.6 GmaAffx.19830.1.S1_at Atmg00850 - - 7e+0 At3g07650 COL9 (CONSTANS-LIKE 9) O.I. H.G. S.X.
0.40 57.1 Gma.3692.1.S1_at Atmg00850 - - 2e+0 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.
0.32 43.7 GmaAffx.61837.1.S1_at Atmg00850 - - 2e-11 At3g25840 protein kinase family protein O.I. H.G. S.X.
0.29 39.0 Gma.17071.1.S1_at Atmg00850 - - 6e-2 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) O.I. H.G. S.X.
0.20 25.1 Gma.7806.1.S1_at Atmg00850 - - 8e-5 At3g13340 WD-40 repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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