CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.39299.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g23395: - (HF=2e+0)

Module size 17 genes

NF 0.27

%ile 44.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 98.9 0.92 TaAffx.39299.1.S1_at BG909724 - - 2e+0 At5g23395 - O.I. H.G. S.X.
0.39 56.1 0.94 TaAffx.37703.1.S1_at BJ268324 - - 1e+1 At5g59990 - O.I. H.G. S.X.
0.34 48.1 0.93 TaAffx.83131.1.S1_at CA661501 - - 3e+0 At2g34340 unknown protein O.I. H.G. S.X.
0.33 46.9 0.95 TaAffx.105451.1.S1_at CA734135 - - 1e+0 At3g06730 thioredoxin family protein O.I. H.G. S.X.
0.31 42.7 0.94 TaAffx.66590.1.A1_at BG909262 - - 1e+1 At4g21440 ATMYB102 (ARABIDOPSIS MYB-LIKE 102) O.I. H.G. S.X.
0.30 40.9 0.95 TaAffx.7846.1.S1_at CA647264 - - 2e+1 At5g15670 F-box family protein O.I. H.G. S.X.
0.29 39.2 0.93 TaAffx.112850.1.S1_at CA620326 - - 1e-15 At4g12650 - O.I. H.G. S.X.
0.29 39.2 0.95 TaAffx.80426.1.S1_at CA600418 - - 4e-1 At2g12935 unknown protein O.I. H.G. S.X.
0.29 39.2 0.94 TaAffx.39326.1.S1_at BG909116 - - 5e+0 At5g44170 - O.I. H.G. S.X.
0.27 35.6 0.94 Ta.5079.2.S1_x_at CA654780 - - 3e-1 At3g16140 PSAH-1 (photosystem I subunit H-1) O.I. H.G. S.X.
0.27 35.6 0.95 TaAffx.119601.1.S1_at BJ266980 - - 9e+0 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.23 29.0 0.93 TaAffx.106663.1.S1_at CA714004 - - 1e+0 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) O.I. H.G. S.X.
0.22 27.1 0.95 TaAffx.26470.1.S1_at CA688638 - - 4e+0 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.
0.16 18.2 0.92 TaAffx.85981.4.S1_at CA626243 - - 2e-60 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) O.I. H.G. S.X.
0.15 17.1 0.95 Ta.30411.1.S1_at CK209297 - - 5e+0 At5g62280 unknown protein O.I. H.G. S.X.
0.14 15.8 0.94 TaAffx.25008.1.S1_at CA708299 - - 1e+1 At5g24370 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.14 15.8 0.95 Ta.6759.2.S1_at BJ211299 - - 2e+0 At5g63310 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.5 99.3 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.4 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1 98.8 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.2 98.1 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.1 97.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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