Co-expression analysis

Gene ID	TaAffx.38546.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g35090: unknown protein (HF=1e+0)
Module size	19 genes
NF	0.31
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.96	TaAffx.38546.1.A1_at	BJ219894	-	-	1e+0	At2g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.98	Ta.21586.1.S1_at	CA734606	-	-	3e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.21586.1.S1_x_at	CA734606	-	-	3e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.13851.1.S1_at	CK170778	-	-	7e-23	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.97	Ta.10521.2.S1_x_at	BQ171091	-	-	4e+0	At5g46870	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.7585.1.S1_at	CK206711	-	-	3e-9	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.4211.1.A1_at	BJ261144	-	-	2e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.7608.2.A1_x_at	CA703665	-	-	5e+0	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.99	Ta.4980.1.S1_at	CK213203	-	-	9e+0	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.21119.1.S1_a_at	CD915118	-	-	3e-3	At3g63000	NPL41 (NPL4-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.9230.2.S1_at	BE398420	-	-	6e+0	At5g46090	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.3578.1.S1_at	CK153854	-	-	4e-12	At3g06820	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.608.1.S1_x_at	BJ319046	-	-	2e-8	At5g09920	NRPB4	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.98	Ta.27752.1.S1_x_at	CK213059	-	-	4e-10	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.822.2.S1_x_at	CD901100	-	-	1e-90	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.98	Ta.10139.1.S1_s_at	BJ309587	-	-	2e-41	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.97	Ta.2830.1.S1_at	CD934919	-	-	4e-6	At3g14100	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.3	91.5	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.1	90.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.0	89.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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