Co-expression analysis

Gene ID	TaAffx.38492.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g19910: SOH1 family protein (HF=2e+0)
Module size	6 genes
NF	0.32
%ile	52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.96	TaAffx.38492.1.S1_at	BJ228093	-	-	2e+0	At5g19910	SOH1 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.27844.1.S1_at	BQ169125	-	-	6e+0	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.9407.1.S1_a_at	AJ609722	-	-	7e-10	At3g11964	RNA binding	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	TaAffx.15135.1.S1_at	AJ614291	-	-	1e+0	At2g33775	RALFL19 (ralf-like 19)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	Ta.9201.3.S1_at	CA603340	-	-	1e-4	At1g56110	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.16984.1.A1_at	CD452579	-	-	1e-1	At2g18120	SRS4 (SHI-RELATED SEQUENCE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.1	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
18.5	99.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
11.5	99.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
7.9	98.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage