Co-expression analysis

Gene ID	TaAffx.38489.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g57040: ARR9 (RESPONSE REGULATOR 9) (HF=1e-3)
Module size	8 genes
NF	0.04
%ile	11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.90	TaAffx.38489.1.S1_at	BJ228910	-	-	1e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.96	Ta.4617.1.A1_x_at	BJ268823	Hypothetical LOC543011	-	8e-7	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.94	Ta.29486.1.A1_a_at	CD868705	-	-	1e-7	At5g07960	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.8469.1.S1_at	CA624919	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	TaAffx.84292.1.S1_at	CA640524	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	TaAffx.83300.1.S1_x_at	CA659037	-	-	4e-3	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.96	TaAffx.82756.1.S1_at	CA667679	-	-	1e+1	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.96	Ta.2953.1.S1_s_at	BJ215386	-	-	7e-2	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.2	98.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.0	98.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.2	98.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.8	97.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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