Co-expression analysis

Gene ID TaAffx.38420.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g51960: IQD27 (IQ-domain 27) (HF=3e-1)
Module size 22 genes
NF 0.30
%ile 49.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.10.93TaAffx.38420.1.S1_atBJ233527--3e-1At1g51960IQD27 (IQ-domain 27)O.I.H.G.S.X.
0.4464.50.95Ta.7011.2.S1_a_atCA636224--1e-9At2g22310ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)O.I.H.G.S.X.
0.4464.50.96Ta.21114.2.S1_atBG604841--4e-47At3g19980ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)O.I.H.G.S.X.
0.4362.20.94Ta.14705.3.S1_a_atCA677338--4e+0At3g05500rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.3956.10.96Ta.1348.3.S1_a_atCA662224--1e-12At5g4562026S proteasome regulatory subunit, putative (RPN9)O.I.H.G.S.X.
0.3753.00.95TaAffx.116915.1.S1_s_atCA612667--2e+0At1g25420unknown proteinO.I.H.G.S.X.
0.3651.90.97Ta.7299.2.S1_a_atCA605243--5e-12At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.
0.3549.80.96Ta.5581.3.S1_atBJ232695--1e-5At3g01150PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)O.I.H.G.S.X.
0.3346.90.97Ta.7422.3.S1_a_atCA593775--6e-5At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.3142.70.97TaAffx.121937.1.S1_atBG263835--5e-9At1g79090unknown proteinO.I.H.G.S.X.
0.3040.90.96Ta.4798.3.S1_a_atCA601924vacuolar proton ATPase subunit H-4e+0At1g27420kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2939.20.95Ta.6666.3.S1_x_atCA720211--4e-3At3g03180Got1-like family proteinO.I.H.G.S.X.
0.2839.20.96Ta.10221.3.S1_atBJ226299--2e-3At3g52120SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinO.I.H.G.S.X.
0.2735.60.95Ta.14051.2.S1_a_atCA594142--8e-11At2g38020VCL1 (VACUOLELESS 1)O.I.H.G.S.X.
0.2532.10.96TaAffx.115727.1.S1_atBJ314247--4e+0At1g68120BPC3 (BASIC PENTACYSTEINE 3)O.I.H.G.S.X.
0.2329.00.95Ta.27318.1.S1_atBG908329--2e-76At4g11380beta-adaptin, putativeO.I.H.G.S.X.
0.2125.50.97Ta.23742.2.S1_a_atBJ233343--1e-55At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.2125.50.95TaAffx.83918.1.S1_atCA648239--1e-9At5g06180-O.I.H.G.S.X.
0.2024.00.96TaAffx.128478.2.S1_s_atCA610609--8e-11At5g32470-O.I.H.G.S.X.
0.2024.00.97Ta.13635.2.S1_a_atCA499433--1e-11At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.1719.80.93Ta.5366.3.S1_a_atCA606616--4e+0At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X.
0.1314.60.96Ta.6673.1.A1_a_atBJ319533--2e-9At5g55530C2 domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.391.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.291.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.190.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.190.3GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.190.3GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.089.7GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.089.7GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.089.7GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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