Co-expression analysis

Gene ID	TaAffx.38158.4.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g44330: zinc finger (C3HC4-type RING finger) family protein (HF=1e-3)
Module size	25 genes
NF	0.36
%ile	58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	0.96	TaAffx.38158.4.S1_x_at	CA630021	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.97	Ta.22762.3.S1_a_at	CA614703	steroid membrane binding protein-like	-	2e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.97	Ta.959.2.S1_at	CD904099	-	-	1e+0	At5g16990	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.23895.1.S1_x_at	CK205337	-	-	3e-55	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.9326.1.S1_a_at	CA705658	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.1892.1.S1_at	CK163495	Vacuolar ATPase subunit G	-	2e-6	At4g23710	VAG2	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.9326.1.S1_x_at	CA705658	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.14353.1.S1_at	BU100478	-	-	5e-4	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.13231.1.S1_at	BJ286554	vacuolar proton ATPase subunit E	-	7e-35	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.357.1.S1_at	BJ239138	-	-	8e-20	At5g22060	ATJ2	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.2505.1.A1_at	BJ261362	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.23807.6.A1_x_at	CK212414	-	-	1e-175	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.23807.6.A1_at	CK212414	-	-	1e-175	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.7234.2.S1_at	BJ269596	-	-	2e-8	At2g45010	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.2305.2.S1_x_at	CD909723	-	-	5e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.27101.10.S1_x_at	AJ613323	-	-	1e-26	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.6290.1.S1_at	BJ301403	-	-	1e-10	At1g49010	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.2502.1.S1_a_at	BJ241868	HSP80-2	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.30747.1.S1_a_at	CK209124	-	-	5e+0	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.5057.3.A1_at	CK194001	Profilin /// Profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.1198.1.S1_at	BJ272933	-	-	1e-8	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.16668.1.S1_x_at	CK212492	-	-	2e+0	At3g54826	-	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.28321.1.S1_a_at	CK211481	Ubiquitin-conjugating enzyme	-	2e-25	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.829.1.S1_at	BJ283440	-	-	2e-47	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.8474.1.A1_at	BQ161952	-	-	6e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	95.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
1.9	88.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
1.9	88.9	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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