Co-expression analysis

Gene ID TaAffx.38158.4.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At2g44330: zinc finger (C3HC4-type RING finger) family protein (HF=1e-3)
Module size 25 genes
NF 0.36
%ile 58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7991.30.96TaAffx.38158.4.S1_x_atCA630021--1e-3At2g44330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5173.00.97Ta.22762.3.S1_a_atCA614703steroid membrane binding protein-like-2e-16At3g48890ATMP2O.I.H.G.S.X.
0.5173.00.97Ta.959.2.S1_atCD904099--1e+0At5g16990NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.5072.40.97Ta.23895.1.S1_x_atCK205337--3e-55At4g34720AVA-P1O.I.H.G.S.X.
0.4869.00.97Ta.9326.1.S1_a_atCA705658--4e-2At3g47300SELT (SELT-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.4666.80.97Ta.1892.1.S1_atCK163495Vacuolar ATPase subunit G-2e-6At4g23710VAG2O.I.H.G.S.X.
0.4362.20.97Ta.9326.1.S1_x_atCA705658--4e-2At3g47300SELT (SELT-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.4362.20.98Ta.14353.1.S1_atBU100478--5e-4At5g52200unknown proteinO.I.H.G.S.X.
0.4159.60.97Ta.13231.1.S1_atBJ286554vacuolar proton ATPase subunit E-7e-35At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.3956.10.96Ta.357.1.S1_atBJ239138--8e-20At5g22060ATJ2O.I.H.G.S.X.
0.3854.70.97Ta.2505.1.A1_atBJ261362--2e-33At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.3651.90.97Ta.23807.6.A1_x_atCK212414--1e-175At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.3651.90.97Ta.23807.6.A1_atCK212414--1e-175At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.3651.90.97Ta.7234.2.S1_atBJ269596--2e-8At2g45010unknown proteinO.I.H.G.S.X.
0.3651.90.97Ta.2305.2.S1_x_atCD909723--5e+0At5g57000unknown proteinO.I.H.G.S.X.
0.3346.90.97Ta.27101.10.S1_x_atAJ613323--1e-26At5g10980histone H3O.I.H.G.S.X.
0.3244.40.97Ta.6290.1.S1_atBJ301403--1e-10At1g49010myb family transcription factorO.I.H.G.S.X.
0.3142.70.97Ta.2502.1.S1_a_atBJ241868HSP80-2-0At5g56000heat shock protein 81-4 (HSP81-4)O.I.H.G.S.X.
0.2735.60.97Ta.30747.1.S1_a_atCK209124--5e+0At5g01712CPuORF48 (Conserved peptide upstream open reading frame 48)O.I.H.G.S.X.
0.2633.60.97Ta.5057.3.A1_atCK194001Profilin /// Profilin-2e-12At4g29350PFN2 (PROFILIN 2)O.I.H.G.S.X.
0.2633.60.97Ta.1198.1.S1_atBJ272933--1e-8At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.H.G.S.X.
0.2532.10.97Ta.16668.1.S1_x_atCK212492--2e+0At3g54826-O.I.H.G.S.X.
0.2329.00.98Ta.28321.1.S1_a_atCK211481Ubiquitin-conjugating enzyme-2e-25At3g08690UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)O.I.H.G.S.X.
0.2329.00.97Ta.829.1.S1_atBJ283440--2e-47At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.2125.50.97Ta.8474.1.A1_atBQ161952--6e-15At3g06483PDK (PYRUVATE DEHYDROGENASE KINASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.8GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.094.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.793.3GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.592.5GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.391.5GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.190.3GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.190.3GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.190.3GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
1.988.9GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
1.988.9GSM139912Anther pre-meiosis rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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