Co-expression analysis

Gene ID	TaAffx.38017.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g27930: protein phosphatase 2C, putative / PP2C, putative (HF=3e-1)
Module size	13 genes
NF	0.30
%ile	48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	0.91	TaAffx.38017.1.A1_at	BJ254833	-	-	3e-1	At5g27930	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.93	TaAffx.9093.1.S1_at	CA612741	-	-	2e+0	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	TaAffx.80607.2.A1_at	BJ229352	-	-	3e-1	At4g23670	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	Ta.15243.1.S1_at	BG905193	-	-	7e-1	At3g13660	disease resistance response	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	Ta.22653.1.S1_at	CA601253	-	-	1e+0	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	Ta.4479.3.S1_at	CA655446	-	-	4e-4	At3g04800	ATTIM23-3	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.11660.1.S1_at	BQ170555	-	-	4e+0	At5g29613	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	TaAffx.81722.1.S1_at	CA682624	-	-	3e-1	At2g19130	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.94	TaAffx.12418.1.A1_at	BJ265615	-	-	5e-12	At5g38240	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.94232.1.S1_at	CA658145	-	-	1e-2	At2g30740	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.93	TaAffx.72739.1.S1_at	CK163175	-	-	7e+0	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.6155.1.S1_at	CD867059	-	-	1e-1	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.93	TaAffx.81128.1.S1_at	CA689253	-	-	1e-2	At5g11020	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
14.5	99.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
14.2	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
13.3	99.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.1	98.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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