Co-expression analysis

Gene ID	TaAffx.37139.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g76420: CUC3 (CUP SHAPED COTYLEDON3) (HF=2e-3)
Module size	17 genes
NF	0.71
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	1.00	TaAffx.37139.1.S1_at	CD897160	-	-	2e-3	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	O.I.	H.G.	S.X.	Please select
0.91	98.2	1.00	Ta.24114.12.S1_x_at	BJ242193	-	-	1e+0	At5g10520	RBK1 (Rop Binding protein Kinases 1)	O.I.	H.G.	S.X.	Please select
0.87	94.2	1.00	Ta.28312.1.S1_x_at	BJ241990	triticin	-	7e-2	At3g19360	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.85	93.8	1.00	Ta.9799.1.S1_at	BQ805009	-	-	3e-1	At3g60440	-	O.I.	H.G.	S.X.	Please select
0.83	93.4	1.00	Ta.13254.1.S1_x_at	BJ240159	HMW glutenin	-	1e+0	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	O.I.	H.G.	S.X.	Please select
0.80	92.2	1.00	Ta.1314.1.S1_at	Y11485.1	serpin 1	-	3e+0	At2g25240	serine-type endopeptidase inhibitor	O.I.	H.G.	S.X.	Please select
0.80	92.2	1.00	Ta.28312.1.S1_at	BJ241990	triticin	-	7e-2	At3g19360	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	1.00	Ta.1314.1.S1_s_at	Y11485.1	serpin 1 /// serpin /// serpin	-	3e+0	At2g25240	serine-type endopeptidase inhibitor	O.I.	H.G.	S.X.	Please select
0.71	88.0	1.00	Ta.1308.1.S1_at	CD918842	beta purothionin precursor	-	1e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.65	83.9	1.00	Ta.28632.1.S1_x_at	M16060.1	gamma-gliadin	-	3e-2	At1g18750	AGL65 (AGAMOUS-LIKE 65)	O.I.	H.G.	S.X.	Please select
0.63	83.1	1.00	Ta.6175.1.S1_at	CD906599	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.	Please select
0.60	81.0	1.00	Ta.23142.8.S1_x_at	BJ235564	low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low-molecular-weight glutenin storage protein	-	2e-1	At1g74055	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	1.00	Ta.6175.1.S1_x_at	CD906599	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.	Please select
0.59	79.8	1.00	Ta.117.1.S1_at	CD914973	serpin	-	7e-1	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.55	76.8	1.00	TaAffx.52381.1.S1_at	CA708355	-	-	1e+0	At5g22530	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	1.00	Ta.24963.1.S1_x_at	BJ241536	HMW glutenin	-	1e+0	At5g65790	MYB68 (MYB DOMAIN PROTEIN 68)	O.I.	H.G.	S.X.	Please select
0.47	67.9	1.00	Ta.160.1.S1_x_at	U86028.1	pre-gamma-gliadin B-I	-	7e-1	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
37.6	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
36.4	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
34.9	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
23.2	99.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.1	97.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.9	97.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage