Co-expression analysis

Gene ID TaAffx.3664.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g47710: universal stress protein (USP) family protein (HF=2e+0)
Module size 6 genes
NF 0.67
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.8393.40.96TaAffx.4857.1.S1_atCA730111--4e+0At1g77682-O.I.H.G.S.X.
0.8092.20.96TaAffx.79437.1.S1_atCA715704--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.5576.80.96TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5576.80.97TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.999.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.397.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM143524Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6445.1.A1_at, orthologous to the query gene, TaAffx.3664.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5674.4Zm.6445.1.A1_atAt2g47710--1e+1At5g04238unknown proteinO.I.H.G.S.X.
0.7590.8Zm.1973.1.S1_atAt2g47710hypothetical protein LOC100217077-5e-5At1g12680PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)O.I.H.G.S.X.
0.7188.2Zm.13703.1.A1_atAt2g47710peptide methionine sulfoxide reductase-9e-3At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)O.I.H.G.S.X.
0.6381.1Zm.5943.1.A1_atAt2g47710--3e-1At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.
0.6179.5Zm.10060.1.A1_atAt2g47710hypothetical protein LOC100217199-9e-18At3g01150PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)O.I.H.G.S.X.
0.5775.1Zm.948.1.A1_atAt2g47710--3e+0At4g03620myosin heavy chain-relatedO.I.H.G.S.X.
0.5571.6Zm.4406.2.A1_atAt2g47710--8e-4At1g34790TT1 (transparent testa 1)O.I.H.G.S.X.
0.3641.3Zm.8568.1.S1_atAt2g47710--2e+0At1g06790RNA polymerase Rpb7 N-terminal domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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