Co-expression analysis

Gene ID TaAffx.3664.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g47710: universal stress protein (USP) family protein (HF=2e+0)
Module size 6 genes
NF 0.67
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.8393.40.96TaAffx.4857.1.S1_atCA730111--4e+0At1g77682-O.I.H.G.S.X.
0.8092.20.96TaAffx.79437.1.S1_atCA715704--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.5576.80.96TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5576.80.97TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.999.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.397.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM143524Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HA11E24u_at, orthologous to the query gene, TaAffx.3664.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5774.9HA11E24u_atAt2g47710--1e+1At1g11905-O.I.H.G.S.X.
0.5167.5HA28H23r_atAt2g47710--4e+0At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.5167.5HVSMEc0015E05f_atAt2g47710--2e-19Atcg00180-O.I.H.G.S.X.
0.4458.9HM11L09r_atAt2g47710--3e+0At1g10745-O.I.H.G.S.X.
0.3240.3HVSMEf0014C12r2_s_atAt2g47710--1e+1At5g03840TFL1 (TERMINAL FLOWER 1)O.I.H.G.S.X.
0.2935.5HW08G03u_x_atAt2g47710--4e+0At5g24860FPF1 (FLOWERING PROMOTING FACTOR 1)O.I.H.G.S.X.
0.2732.1HB24M20r_s_atAt2g47710--7e-1At1g68240transcription factorO.I.H.G.S.X.
0.2630.4Contig4579_s_atAt2g47710--2e-9At5g21150PAZ domain-containing protein / piwi domain-containing proteinO.I.H.G.S.X.
0.2528.9HA12O12u_x_atAt2g47710--2e+0At5g08460GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.2427.2HW06C04u_x_atAt2g47710--7e+0At3g05980unknown proteinO.I.H.G.S.X.
0.2224.2HW08F07V_s_atAt2g47710--2e+0At5g06265hyaluronan mediated motility receptor-relatedO.I.H.G.S.X.
0.2021.1HW01I10u_x_atAt2g47710--6e+0At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.1919.6HA12O12u_atAt2g47710--2e+0At5g08460GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.1716.9HY04C04u_atAt2g47710--7e-1At1g09490cinnamyl-alcohol dehydrogenase family / CAD familyO.I.H.G.S.X.
0.1716.9Contig14013_s_atAt2g47710--4e+0At5g55690MADS-box protein (AGL47)O.I.H.G.S.X.
0.1311.6HVSMEf0019G16r2_s_atAt2g47710--1e+0At1g07750cupin family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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