Co-expression analysis

Gene ID	TaAffx.33402.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g19510: LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8) (HF=3e+0)
Module size	6 genes
NF	0.14
%ile	27.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.82	TaAffx.33402.1.A1_at	BU808668	-	-	3e+0	At2g19510	LBD8 (LOB DOMAIN-CONTAINING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	TaAffx.81752.1.S1_at	CA682283	-	-	4e+0	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	TaAffx.57555.1.S1_at	CA618738	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.93	Ta.5807.2.S1_at	BJ290044	-	-	3e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.94	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	TaAffx.51397.1.S1_at	CA725473	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	99.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
13.5	99.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
11.3	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.2	99.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.6	98.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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