Co-expression analysis

Gene ID TaAffx.32412.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g47870: LBD27 (LOB DOMAIN-CONTAINING PROTEIN 27) (HF=1e-3)
Module size 7 genes
NF 0.78
%ile 96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.90TaAffx.32412.1.S1_atCA595509--1e-3At3g47870LBD27 (LOB DOMAIN-CONTAINING PROTEIN 27)O.I.H.G.S.X.
0.8694.10.89Ta.3320.1.S1_atBJ306579--3e-3At5g14680universal stress protein (USP) family proteinO.I.H.G.S.X.
0.7389.10.92TaAffx.112188.1.S1_atCA625505--2e+1At4g38092unknown proteinO.I.H.G.S.X.
0.7188.00.87TaAffx.110185.1.S1_atCA662304--1e+1At5g18880-O.I.H.G.S.X.
0.7188.00.91TaAffx.108984.1.S1_atCA681537--4e+0At4g35070-O.I.H.G.S.X.
0.6081.00.92Ta.10440.2.S1_atBJ247141--1e+0At5g10780-O.I.H.G.S.X.
0.5576.80.93TaAffx.58364.1.S1_atCA620231--2e+1At4g10610CID12O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.999.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.597.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.997.3GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.897.2GSM298077Leaf tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM139930Anther immature pollen rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.496.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.795.8GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM139926Anther tetrads rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM138207genotype B11 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os09g0364100, orthologous to the query gene, TaAffx.32412.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os09g0364100At3g47870-Conserved hypothetical protein2e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5068.0Os10g0403400At3g47870-Hypothetical protein7e-1At4g33660unknown proteinO.I.H.G.S.X.
0.5068.0Os06g0212500At3g47870--2e-1At2g03210FUT2 (FUCOSYLTRANSFERASE 2)O.I.H.G.S.X.
0.3846.9Os10g0186900At3g47870-Conserved hypothetical protein3e-1At1g18210calcium-binding protein, putativeO.I.H.G.S.X.
0.3236.3Os12g0165600At3g47870-Exo70 exocyst complex subunit family protein6e-5At5g13990ATEXO70C2 (exocyst subunit EXO70 family protein C2)O.I.H.G.S.X.
0.3134.5Os06g0609400At3g47870-Hypothetical protein6e+0At1g25054UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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