Co-expression analysis

Gene ID	TaAffx.32121.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g17609: HYH (HY5-HOMOLOG) (HF=7e-1)
Module size	6 genes
NF	0.07
%ile	17.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.90	TaAffx.32121.1.S1_at	CA600532	-	-	7e-1	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	TaAffx.9280.1.S1_at	CA604766	-	-	4e+0	At5g16530	PIN5 (PIN-FORMED 5)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	TaAffx.38270.1.A1_at	BJ242226	-	-	1e+0	At2g13980	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.95	TaAffx.93989.1.A1_at	BG908889	-	-	3e+0	At3g28321	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	TaAffx.11289.1.S1_at	CA631316	-	-	3e+0	At5g38310	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	TaAffx.6430.1.S1_at	CA686025	-	-	3e-4	At3g04460	PEX12	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.8	97.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4	97.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0	96.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage