Co-expression analysis

Gene ID	TaAffx.32098.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g22160: VQ motif-containing protein (HF=9e-1)
Module size	12 genes
NF	0.65
%ile	89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.8	0.82	TaAffx.32098.1.S1_at	CA600929	-	-	9e-1	At3g22160	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.83	TaAffx.9357.1.S1_at	CA600987	-	-	4e+0	At4g00340	RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.86	TaAffx.56833.1.S1_at	CA642992	-	-	4e+0	At5g43750	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.86	TaAffx.107856.1.S1_at	CA694359	-	-	4e+0	At5g52605	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.88	TaAffx.8047.1.S1_at	CA638257	-	-	3e-1	At1g70270	ATP binding / DNA binding	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.85	TaAffx.58444.1.S1_at	CA619595	-	-	4e+0	At5g07850	transferase family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.87	TaAffx.31501.1.S1_at	CA614715	-	-	4e+0	At4g15715	-	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.86	TaAffx.56944.1.S1_at	CA639703	-	-	4e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.88	TaAffx.54175.1.S1_at	CA684847	-	-	4e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.83	TaAffx.109079.1.S1_at	CA680429	-	-	4e+0	At4g08869	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.88	TaAffx.105253.1.S1_x_at	CA737190	-	-	4e+0	At4g10430	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.83	TaAffx.84870.1.S1_at	AJ613575	-	-	2e-2	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
11.0	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.9	98.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.0	97.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage