Co-expression analysis

Gene ID TaAffx.31754.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g21410: protein kinase family protein (HF=2e-1)
Module size 9 genes
NF 0.49
%ile 74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4464.50.90TaAffx.31754.1.S1_atCA608501--2e-1At4g21410protein kinase family proteinO.I.H.G.S.X.
0.7188.00.94Ta.8356.1.S1_atBQ161783--7e+0At5g11550bindingO.I.H.G.S.X.
0.6383.10.94Ta.25531.1.A1_atCD373817--6e+0At2g48130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5374.90.93Ta.27279.1.S1_atBT009316.1--6e-1At1g14290SBH2 (SPHINGOID BASE HYDROXYLASE 2)O.I.H.G.S.X.
0.5273.70.95Ta.26048.1.S1_x_atCD454944--3e+1At5g42100ATBG_PAPO.I.H.G.S.X.
0.4260.90.92Ta.8356.1.S1_s_atBQ161783--7e+0At5g11550bindingO.I.H.G.S.X.
0.4058.40.95Ta.25531.2.A1_x_atCA680295--4e+0At2g48130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3549.80.94TaAffx.110067.1.S1_s_atCD884065--5e+0At4g02770PSAD-1 (photosystem I subunit D-1)O.I.H.G.S.X.
0.2939.20.94TaAffx.82706.1.S1_atCA668277--1e+1At3g13730CYP90D1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.999.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.098.5GSM143522Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
7.098.5GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
7.098.5GSM143504Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
6.898.4GSM143503Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.697.8GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.497.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.797.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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