CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.31715.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g14840: ATMAP70-4 (microtubule-associated proteins 70-4) (HF=3e-1)

Module size 6 genes

NF 0.04

%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.95 TaAffx.31715.1.S1_at CA609290 - - 3e-1 At1g14840 ATMAP70-4 (microtubule-associated proteins 70-4) O.I. H.G. S.X.
0.21 25.5 0.95 TaAffx.6598.2.S1_s_at CA720245 - - 7e-9 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.15 17.1 0.96 TaAffx.81795.1.S1_at CA644276 - - 2e-4 At5g57320 villin, putative O.I. H.G. S.X.
0.05 6.7 0.95 Ta.25380.1.A1_x_at CD453533 - - 5e-3 At1g65720 unknown protein O.I. H.G. S.X.
0.01 2.4 0.95 Ta.11895.1.S1_at BQ171007 - - 4e-6 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) O.I. H.G. S.X.
0.01 2.4 0.95 Ta.2270.3.S1_at CA610189 - - 3e-1 At2g24480 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.9 98.7 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.6 97.8 GSM324484 Si- B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.8 97.2 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3 96.7 GSM324490 Si+ B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.7 95.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6 95.6 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM143512 Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1 94.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.109871.1.S1_at, orthologous to the query gene, TaAffx.31715.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 PtpAffx.109871.1.S1_at At1g14840 hypothetical protein - 2e-81 At1g24764 ATMAP70-2 (microtubule-associated proteins 70-2) O.I. H.G. S.X.
0.73 93.6 Ptp.6399.1.S1_at At1g14840 - - 3e-23 At3g16060 kinesin motor family protein O.I. H.G. S.X.
0.60 86.0 Ptp.6399.1.S1_s_at At1g14840 hypothetical protein - 3e-23 At3g16060 kinesin motor family protein O.I. H.G. S.X.
0.44 71.9 PtpAffx.77934.1.S1_at At1g14840 hypothetical protein - 2e-11 At2g42960 protein kinase family protein O.I. H.G. S.X.
0.44 71.9 PtpAffx.10090.1.S1_at At1g14840 hypothetical protein - 5e-1 At5g40590 DC1 domain-containing protein O.I. H.G. S.X.
0.31 53.7 Ptp.699.1.S1_at At1g14840 hypothetical protein - 9e-16 At1g01510 AN (ANGUSTIFOLIA) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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