Co-expression analysis

Gene ID	TaAffx.31715.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g14840: ATMAP70-4 (microtubule-associated proteins 70-4) (HF=3e-1)
Module size	6 genes
NF	0.04
%ile	10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.95	TaAffx.31715.1.S1_at	CA609290	-	-	3e-1	At1g14840	ATMAP70-4 (microtubule-associated proteins 70-4)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.6598.2.S1_s_at	CA720245	-	-	7e-9	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	TaAffx.81795.1.S1_at	CA644276	-	-	2e-4	At5g57320	villin, putative	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.95	Ta.25380.1.A1_x_at	CD453533	-	-	5e-3	At1g65720	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.95	Ta.2270.3.S1_at	CA610189	-	-	3e-1	At2g24480	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.6	97.8	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.8	97.2	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.7	95.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM143512	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10866.1.S1_at, orthologous to the query gene, TaAffx.31715.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	Gma.10866.1.S1_at	At1g14840	-	-	3e-14	At1g68060	ATMAP70-1 (microtubule-associated proteins 70-1)	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.68027.1.S1_at	At1g14840	-	-	9e-1	At5g20120	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.1301.88.S1_s_at	At1g14840	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.34174.1.S1_at	At1g14840	-	-	6e-30	At3g17840	RLK902	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.11254.1.S1_x_at	At1g14840	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.11254.1.S1_a_at	At1g14840	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.7725.1.S1_at	At1g14840	-	-	4e-10	At5g10020	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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