Co-expression analysis

Gene ID	TaAffx.31583.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g42540: COR15A (COLD-REGULATED 15A) (HF=1e-2)
Module size	18 genes
NF	0.16
%ile	30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.82	TaAffx.31583.1.S1_at	CA612531	-	-	1e-2	At2g42540	COR15A (COLD-REGULATED 15A)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.89	TaAffx.80394.1.S1_at	CA697325	-	-	1e+0	At1g16640	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	Ta.13274.2.A1_at	CA613778	-	-	7e-2	At5g05360	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	TaAffx.4083.3.S1_at	CA633558	-	-	7e-5	At2g14720	VSR-2	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	TaAffx.15154.2.S1_s_at	CA744371	-	-	9e-1	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.91	TaAffx.78296.1.S1_at	CA734700	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.92	Ta.11134.2.S1_at	CA607725	-	-	1e+0	At1g23770	F-box family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.5079.2.S1_x_at	CA654780	-	-	3e-1	At3g16140	PSAH-1 (photosystem I subunit H-1)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.90	TaAffx.4355.1.S1_at	CA744098	-	-	5e+0	At4g02370	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.91	TaAffx.77761.1.S1_at	CA743191	-	-	1e+0	At4g16450	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.91	TaAffx.78266.1.S1_at	CA735361	-	-	2e-4	At3g25480	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.93	Ta.25516.1.S1_x_at	CD885585	-	-	2e-1	At5g39800	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.93	TaAffx.4744.1.S1_at	CA733134	-	-	4e+0	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.91	Ta.974.2.S1_at	CA747351	-	-	5e+0	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	TaAffx.58645.1.S1_at	CA617642	-	-	4e+0	At1g67325	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.93	TaAffx.12517.1.S1_at	BJ257824	-	-	1e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.94	TaAffx.85343.1.S1_at	CA623566	-	-	4e+0	At5g34828	-	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.92	Ta.22060.1.A1_at	BG906078	-	-	2e-1	At2g20690	lumazine-binding family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.5	99.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.2	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.0	98.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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