Co-expression analysis

Gene ID	TaAffx.31123.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g07360: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (HF=8e-11)
Module size	6 genes
NF	0.05
%ile	14.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.75	TaAffx.31123.1.S1_at	CA619316	-	-	8e-11	At1g07360	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	Ta.3630.1.S1_at	BM135454	-	-	6e+0	At5g61230	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.92	TaAffx.122151.1.S1_at	CA620796	-	-	4e-25	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.90	Ta.3590.3.S1_at	CA676407	-	-	2e-2	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.92	TaAffx.115066.2.S1_at	CA618856	-	-	4e-28	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.91	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.3	99.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.0	98.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.9	97.3	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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